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Systematic FAIRness Assessment of Open Voice Biomarker Datasets for Mental Health and Neurodegenerative Diseases

arXiv.org Artificial Intelligence

Voice biomarkers--human-generated acoustic signals such as speech, coughing, and breathing--are promising tools for scalable, non-invasive detection and monitoring of mental health and neurodegenerative diseases. Yet, their clinical adoption remains constrained by inconsistent quality and limited usability of publicly available datasets. To address this gap, we present the first systematic FAIR (Findable, Accessible, Interoperable, Reusable) evaluation of 27 publicly available voice biomarker datasets focused on these disease areas. Using the FAIR Data Maturity Model and a structured, priority-weighted scoring method, we assessed FAIRness at subprinciple, principle, and composite levels. Our analysis revealed consistently high Findability but substantial variability and weaknesses in Accessibility, Interoperability, and Reusability. Mental health datasets exhibited greater variability in FAIR scores, while neurodegenerative datasets were slightly more consistent. Repository choice also significantly influenced FAIRness scores. To enhance dataset quality and clinical utility, we recommend adopting structured, domain-specific metadata standards, prioritizing FAIR-compliant repositories, and routinely applying structured FAIR evaluation frameworks. These findings provide actionable guidance to improve dataset interoperability and reuse, thereby accelerating the clinical translation of voice biomarker technologies.


FAIR GPT: A virtual consultant for research data management in ChatGPT

arXiv.org Artificial Intelligence

FAIR GPT is a first virtual consultant in ChatGPT designed to help researchers and organizations make their data and metadata compliant with the FAIR (Findable, Accessible, Interoperable, Reusable) principles. It provides guidance on metadata improvement, dataset organization, and repository selection. To ensure accuracy, FAIR GPT uses external APIs to assess dataset FAIRness, retrieve controlled vocabularies, and recommend repositories, minimizing hallucination and improving precision. It also assists in creating documentation (data and software management plans, README files, and codebooks), and selecting proper licenses. This paper describes its features, applications, and limitations.


AutoFAIR : Automatic Data FAIRification via Machine Reading

arXiv.org Artificial Intelligence

The explosive growth of data fuels data-driven research, facilitating progress across diverse domains. The FAIR principles emerge as a guiding standard, aiming to enhance the findability, accessibility, interoperability, and reusability of data. However, current efforts primarily focus on manual data FAIRification, which can only handle targeted data and lack efficiency. To address this issue, we propose AutoFAIR, an architecture designed to enhance data FAIRness automately. Firstly, We align each data and metadata operation with specific FAIR indicators to guide machine-executable actions. Then, We utilize Web Reader to automatically extract metadata based on language models, even in the absence of structured data webpage schemas. Subsequently, FAIR Alignment is employed to make metadata comply with FAIR principles by ontology guidance and semantic matching. Finally, by applying AutoFAIR to various data, especially in the field of mountain hazards, we observe significant improvements in findability, accessibility, interoperability, and reusability of data. The FAIRness scores before and after applying AutoFAIR indicate enhanced data value.


FAIR Enough: How Can We Develop and Assess a FAIR-Compliant Dataset for Large Language Models' Training?

arXiv.org Artificial Intelligence

The rapid evolution of Large Language Models (LLMs) underscores the critical importance of ethical considerations and data integrity in AI development, emphasizing the role of FAIR (Findable, Accessible, Interoperable, Reusable) data principles. While these principles have long been a cornerstone of ethical data stewardship, their application in LLM training data is less prevalent, an issue our research aims to address. Our study begins with a review of existing literature, highlighting the significance of FAIR principles in data management for model training. Building on this foundation, we introduce a novel framework that incorporates FAIR principles into the LLM training process. A key aspect of this approach is a comprehensive checklist, designed to assist researchers and developers in consistently applying FAIR data principles throughout the model development lifecycle. The practicality and effectiveness of our framework are demonstrated through a case study that involves creating a FAIR-compliant dataset to detect and reduce biases. This case study not only validates the usefulness of our framework but also establishes new benchmarks for more equitable, transparent, and ethical practices in LLM training. We offer this framework to the community as a means to promote technologically advanced, ethically sound, and socially responsible AI models.


FAIR AI Models in High Energy Physics

arXiv.org Artificial Intelligence

The findable, accessible, interoperable, and reusable (FAIR) data principles provide a framework for examining, evaluating, and improving how data is shared to facilitate scientific discovery. Generalizing these principles to research software and other digital products is an active area of research. Machine learning (ML) models -- algorithms that have been trained on data without being explicitly programmed -- and more generally, artificial intelligence (AI) models, are an important target for this because of the ever-increasing pace with which AI is transforming scientific domains, such as experimental high energy physics (HEP). In this paper, we propose a practical definition of FAIR principles for AI models in HEP and describe a template for the application of these principles. We demonstrate the template's use with an example AI model applied to HEP, in which a graph neural network is used to identify Higgs bosons decaying to two bottom quarks. We report on the robustness of this FAIR AI model, its portability across hardware architectures and software frameworks, and its interpretability.


Transforming Agriculture with Intelligent Data Management and Insights

arXiv.org Artificial Intelligence

Modern agriculture faces grand challenges to meet increased demands for food, fuel, feed, and fiber with population growth under the constraints of climate change and dwindling natural resources. Data innovation is urgently required to secure and improve the productivity, sustainability, and resilience of our agroecosystems. As various sensors and Internet of Things (IoT) instrumentation become more available, affordable, reliable, and stable, it has become possible to conduct data collection, integration, and analysis at multiple temporal and spatial scales, in real-time, and with high resolutions. At the same time, the sheer amount of data poses a great challenge to data storage and analysis, and the \textit{de facto} data management and analysis practices adopted by scientists have become increasingly inefficient. Additionally, the data generated from different disciplines, such as genomics, phenomics, environment, agronomy, and socioeconomic, can be highly heterogeneous. That is, datasets across disciplines often do not share the same ontology, modality, or format. All of the above make it necessary to design a new data management infrastructure that implements the principles of Findable, Accessible, Interoperable, and Reusable (FAIR). In this paper, we propose Agriculture Data Management and Analytics (ADMA), which satisfies the FAIR principles. Our new data management infrastructure is intelligent by supporting semantic data management across disciplines, interactive by providing various data management/analysis portals such as web GUI, command line, and API, scalable by utilizing the power of high-performance computing (HPC), extensible by allowing users to load their own data analysis tools, trackable by keeping track of different operations on each file, and open by using a rich set of mature open source technologies.


FAIR for AI: An interdisciplinary and international community building perspective

arXiv.org Artificial Intelligence

A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were proposed in 2016 as prerequisites for proper data management and stewardship, with the goal of enabling the reusability of scholarly data. The principles were also meant to apply to other digital assets, at a high level, and over time, the FAIR guiding principles have been re-interpreted or extended to include the software, tools, algorithms, and workflows that produce data. FAIR principles are now being adapted in the context of AI models and datasets. Here, we present the perspectives, vision, and experiences of researchers from different countries, disciplines, and backgrounds who are leading the definition and adoption of FAIR principles in their communities of practice, and discuss outcomes that may result from pursuing and incentivizing FAIR AI research. The material for this report builds on the FAIR for AI Workshop held at Argonne National Laboratory on June 7, 2022.


The FAIRy Tale of Genetic Algorithms

arXiv.org Artificial Intelligence

Genetic Algorithm (GA) is a popular meta-heuristic evolutionary algorithm that uses stochastic operators to find optimal solution and has proved its effectiveness in solving many complex optimization problems (such as classification, optimization, and scheduling). However, despite its performance, popularity and simplicity, not much attention has been paid towards reproducibility and reusability of GA. In this paper, we have extended Findable, Accessible, Interoperable and Reusable (FAIR) data principles to enable the reproducibility and reusability of algorithms. We have chosen GA as a usecase to the demonstrate the applicability of the proposed principles. Also we have presented an overview of methodological developments and variants of GA that makes it challenging to reproduce or even find the right source. Additionally, to enable FAIR algorithms, we propose a vocabulary (i.e. $evo$) using light weight RDF format, facilitating the reproducibility. Given the stochastic nature of GAs, this work can be extended to numerous Optimization and machine learning algorithms/methods.


Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence

arXiv.org Artificial Intelligence

Background: The clinical documentation of cystoscopy includes visual and textual materials. However, the secondary use of visual cystoscopic data for educational and research purposes remains limited due to inefficient data management in routine clinical practice. Methods: A conceptual framework was designed to document cystoscopy in a standardized manner with three major sections: data management, annotation management, and utilization management. A Swiss-cheese model was proposed for quality control and root cause analyses. We defined the infrastructure required to implement the framework with respect to FAIR (findable, accessible, interoperable, re-usable) principles. We applied two scenarios exemplifying data sharing for research and educational projects to ensure the compliance with FAIR principles. Results: The framework was successfully implemented while following FAIR principles. The cystoscopy atlas produced from the framework could be presented in an educational web portal; a total of 68 full-length qualitative videos and corresponding annotation data were sharable for artificial intelligence projects covering frame classification and segmentation problems at case, lesion and frame levels. Conclusion: Our study shows that the proposed framework facilitates the storage of the visual documentation in a standardized manner and enables FAIR data for education and artificial intelligence research.


FAIR principles for AI models with a practical application for accelerated high energy diffraction microscopy

arXiv.org Artificial Intelligence

A concise and measurable set of FAIR (Findable, Accessible, Interoperable and Reusable) principles for scientific data is transforming the state-of-practice for data management and stewardship, supporting and enabling discovery and innovation. Learning from this initiative, and acknowledging the impact of artificial intelligence (AI) in the practice of science and engineering, we introduce a set of practical, concise, and measurable FAIR principles for AI models. We showcase how to create and share FAIR data and AI models within a unified computational framework combining the following elements: the Advanced Photon Source at Argonne National Laboratory, the Materials Data Facility, the Data and Learning Hub for Science, and funcX, and the Argonne Leadership Computing Facility (ALCF), in particular the ThetaGPU supercomputer and the SambaNova DataScale system at the ALCF AI Testbed. We describe how this domain-agnostic computational framework may be harnessed to enable autonomous AI-driven discovery.